[string][string]*** Brainpipe Parameters
smooth=1
smoothing array=2,2,2
shrink=1
normalize=4
group 1=[string][string]
group 2=[string]
statistical test=0
# permutations=1000
p-vals for pixel clusters=0.0001,0.00001
min cluster size=3
normalize file=
original images=[path to ljd images (.nii.gz)]
rank transform=0
calc Pt ratio=0
output to=[folder to save output]
include matching=
exclude matching=
# subset=
affine folder=[optional path to ANTS .mat files]
iwarp regions folder=[optional path to inverse warped atlas volumes (.nii.gz)]
experimental=0
